JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF611_chr19_52697813_52740044	0/0	t0013	2390	7	0	0	6	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0014	2390	5	0	2	3	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0015	2392	4	2	1	0	1	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0016	2390	3	2	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0017	2387	3	3	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0018	2396	3	0	0	2	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0019	2394	3	0	1	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0020	2392	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0021	2392	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0022	2395	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0023	2391	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0024	2390	2	2	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0025	2390	2	0	2	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0026	2394	2	0	0	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0027	2389	2	0	1	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0028	2390	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0029	2417	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0030	2391	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0031	2390	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0032	2388	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0033	2389	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0034	2391	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0035	2391	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0036	2395	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0037	2395	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0038	2395	1	0	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0039	2390	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0040	2388	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0041	2391	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0042	2390	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0043	2390	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0044	2388	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0045	2395	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0046	2391	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0047	2390	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0048	2390	1	0	0	0	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0049	2390	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0050	2388	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0051	2390	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0052	2380	1	1	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0053	2123	1	0	0	1	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF613_chr19_51922472_51951621	0/0	t0001	1312	204	46	29	104	6	19	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	1/1	t0002	1312	115	6	25	61	6	15	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0003	1313	43	25	9	1	2	6	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0004	1313	14	13	1	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0005	1313	2	2	0	0	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0006	1312	2	0	0	0	2	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0007	1312	1	0	0	1	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF613_chr19_51922472_51951621	0/0	t0008	1312	1	0	0	1	0	0	copy fasta	ZNF613	chr19	51922472	51951621
ZNF614_chr19_52008324_52033379	1/0	t0001	2871	166	18	36	86	9	16	copy fasta	ZNF614	chr19	52008324	52033379