JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf72_chr2_231032523_231054719	0/0	t0018	2773	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0019	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0020	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0021	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0022	2742	1	0	0	0	0	1	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0023	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0024	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0025	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0026	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0027	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0028	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0029	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0030	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0031	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0032	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0033	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf73_chr2_54325884_54366581	0/1	t0001	1112	250	37	48	127	11	26	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	1/0	t0002	1112	118	24	17	57	6	13	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0003	1112	19	16	2	0	0	1	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0004	1112	7	6	1	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0005	1112	6	1	3	0	1	1	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0006	1112	5	3	1	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0007	1112	4	0	0	4	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0008	1112	1	0	0	0	0	1	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0009	1112	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0010	1112	1	1	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0011	1112	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	t0012	1112	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf74_chr2_61157188_61169828	1/1	t0001	534	380	74	71	179	13	41	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	t0002	534	38	18	13	3	1	3	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	t0003	534	2	2	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	t0004	233	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	t0005	544	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf76_chr2_119297225_119371834	0/1	t0001	309	214	70	36	80	4	23	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	1/0	t0002	305	107	3	28	60	4	11	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	t0003	309	23	9	6	1	3	4	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	t0004	304	5	5	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	t0005	309	4	0	0	3	1	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	t0006	309	1	1	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf78_chr2_73779183_73822148	1/1	t0001	284	206	77	33	60	8	26	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	t0002	157	6	5	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf80_chr2_208160347_208195030	1/0	t0001	614	162	35	33	64	10	19	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/1	t0002	615	130	22	34	40	8	25	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	t0003	615	39	29	0	10	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	t0004	616	8	7	1	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	t0005	614	1	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	t0006	616	1	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	t0007	614	1	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf81_chr2_74409177_74426619	1/1	t0001	212	370	69	64	190	11	34	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	t0002	212	31	29	2	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619