JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF614_chr19_52008324_52033379	0/0	t0002	2876	74	0	7	62	0	5	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0003	2878	51	11	10	21	0	9	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0004	2876	24	3	4	4	6	7	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0005	2873	18	14	4	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0006	2861	11	10	1	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0007	2873	11	10	1	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0008	2878	9	8	1	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0009	2876	7	0	0	7	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0010	2873	6	5	1	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0011	2861	4	0	3	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/1	t0012	2871	3	1	1	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0013	2873	3	3	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0014	2878	3	0	3	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0015	2876	2	0	0	2	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0016	2871	2	0	0	2	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0017	2871	2	2	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0018	2878	2	0	0	0	0	2	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0019	2876	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0020	2876	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0021	2861	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0022	2872	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0023	2879	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0024	2861	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0025	2662	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0026	2871	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0027	2871	1	0	0	0	1	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0028	2871	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0029	2878	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0030	2873	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0031	2871	1	0	0	1	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0032	2878	1	0	0	0	0	1	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0033	2871	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0034	2873	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0035	2855	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF614_chr19_52008324_52033379	0/0	t0036	2878	1	1	0	0	0	0	copy fasta	ZNF614	chr19	52008324	52033379
ZNF615_chr19_51986332_52013211	0/0	t0001	1847	170	35	33	74	10	18	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0002	1851	107	52	14	30	0	11	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0003	1851	59	3	4	36	5	11	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0004	1847	35	0	6	26	1	2	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0005	1849	18	4	10	0	2	2	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0006	1847	2	0	0	2	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0007	1851	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0008	1851	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0009	1847	1	0	1	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0010	1851	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0011	1851	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0012	1851	1	0	0	0	0	1	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	t0013	1851	1	0	0	0	0	1	copy fasta	ZNF615	chr19	51986332	52013211
ZNF616_chr19_52108091_52144938	0/0	t0001	2011	150	18	18	94	4	16	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	1/1	t0002	2011	118	11	32	50	11	12	copy fasta	ZNF616	chr19	52108091	52144938