JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF616_chr19_52108091_52144938	0/0	t0003	2011	69	14	14	27	2	12	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0004	2011	14	13	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0005	2011	12	5	4	3	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0006	2011	8	7	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0007	2011	8	8	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0008	2011	6	6	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0009	2011	5	0	2	0	1	2	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0010	2011	4	3	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0011	2011	3	3	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0012	2013	3	0	0	3	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0013	2011	2	0	0	2	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0014	2011	2	2	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0015	1981	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0016	2011	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0017	2011	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0018	1981	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0019	2011	1	0	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0020	2011	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0021	2011	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0022	2011	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0023	2011	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	t0024	2011	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF618_chr9_113871309_114061593	0/0	t0001	6500	20	0	4	16	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0002	6502	10	0	2	7	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0003	6499	7	7	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0004	6495	6	6	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0005	6500	6	0	0	5	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0006	6495	6	0	5	0	1	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0007	6501	5	0	1	4	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0008	6500	5	0	0	5	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0009	6501	4	1	2	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0010	6501	4	4	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0011	6500	4	0	2	2	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0012	6491	4	4	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0013	6498	4	4	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/1	t0014	6500	4	0	0	0	3	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0015	6502	3	0	1	1	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0016	6499	3	0	3	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0017	6497	3	0	0	0	2	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0018	6498	3	0	0	3	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0019	6498	3	3	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0020	6503	2	2	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0021	6504	2	0	2	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0022	6502	2	2	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0023	6501	2	1	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0024	6502	2	0	0	2	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0025	6499	2	2	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0026	6500	2	0	0	2	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0027	6499	2	0	1	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0028	6499	2	0	1	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593