JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF618_chr9_113871309_114061593	0/0	t0129	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0130	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0131	6500	1	0	0	0	1	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0132	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0133	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0134	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0135	6500	1	0	0	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0136	6500	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0137	6499	1	0	0	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0138	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0139	6500	1	0	0	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0140	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0141	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0142	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0143	6499	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0144	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0145	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0146	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0147	6500	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0148	6500	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0149	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0150	6498	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0151	6498	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0152	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0153	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0154	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0155	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0156	6498	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0157	6496	1	0	0	1	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0158	6500	1	0	0	0	0	1	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0159	6495	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0160	6495	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	t0161	6495	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF619_chr3_40472122_40496053	0/0	t0001	3111	134	15	26	67	10	16	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/1	t0002	3111	116	3	22	71	3	16	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0003	3109	56	14	5	29	1	7	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0004	3111	22	6	6	9	0	1	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0005	3109	12	11	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0006	3111	10	10	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0007	3111	7	0	0	7	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0008	3111	7	7	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0009	3111	6	3	2	0	1	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0010	3111	4	4	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0011	3111	4	4	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0012	3112	3	2	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0013	3111	3	0	0	2	0	1	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0014	3112	3	3	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0015	3109	3	0	0	3	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0016	3111	2	0	0	2	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0017	3111	2	2	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053