JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF619_chr3_40472122_40496053	0/0	t0018	3109	2	2	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0019	3111	2	0	0	0	0	2	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0020	3112	2	1	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0021	3111	2	0	0	2	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0022	3111	2	0	0	2	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	1/0	t0023	3111	2	0	0	0	0	1	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0024	3111	2	0	0	2	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0025	3111	1	0	0	0	1	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0026	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0027	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0028	3112	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0029	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0030	3111	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0031	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0032	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0033	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0034	3111	1	0	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0035	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0036	3109	1	0	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0037	3112	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	t0038	3111	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF620_chr3_40501039_40523736	0/1	t0001	2022	138	15	23	80	3	16	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	1/0	t0002	2023	129	12	30	60	10	16	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0003	2024	34	3	6	23	0	2	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0004	2022	17	14	3	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0005	2021	15	12	2	0	0	1	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0006	2023	15	15	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0007	2024	11	2	0	9	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0008	2023	10	2	0	7	0	1	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0009	2023	8	4	2	0	1	1	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0010	2022	4	0	0	4	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0011	2024	4	4	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0012	2022	4	0	0	4	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0013	2023	3	0	0	3	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0014	2022	2	2	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0015	2023	2	0	0	2	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0016	2023	2	0	0	0	0	2	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0017	2022	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0018	2022	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0019	2023	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0020	2024	1	0	0	0	0	1	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0021	2023	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0022	2022	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0023	2023	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0024	2022	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0025	2023	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0026	2022	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0027	2023	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	t0028	2023	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF621_chr3_40519960_40544782	0/0	t0001	7070	92	8	27	40	8	9	copy fasta	ZNF621	chr3	40519960	40544782