JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF621_chr3_40519960_40544782	0/1	t0002	7069	78	2	14	47	2	12	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0003	7069	58	3	7	41	1	6	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0004	7069	25	0	0	23	0	2	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0005	7069	13	11	2	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0006	7069	10	9	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0007	7069	10	10	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0008	7070	6	2	4	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0009	7067	5	3	2	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0010	7069	5	5	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0011	7069	5	5	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0012	7068	5	5	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0013	7069	4	4	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0014	7068	4	3	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0015	7068	4	4	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	1/0	t0016	7070	4	0	0	0	2	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0017	7067	3	1	0	0	1	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0018	7069	3	0	0	3	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0019	7069	3	0	3	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0020	7070	3	0	0	3	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0021	7069	3	0	1	0	0	2	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0022	7068	2	0	0	1	1	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0023	7069	2	0	2	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0024	7068	2	1	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0025	7068	2	0	0	2	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0026	7069	2	1	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0027	7069	2	0	0	2	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0028	7069	2	0	0	0	0	2	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0029	7068	2	0	0	2	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0030	7069	2	0	2	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0031	7069	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0032	7070	1	0	0	0	0	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0033	7069	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0034	7070	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0035	7069	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0036	7070	1	0	0	0	1	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0037	7069	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0038	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0039	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0040	7055	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0041	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0042	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0043	7067	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0044	7069	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0045	7069	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0046	7070	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0047	7069	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0048	7070	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0049	7070	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0050	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0051	7069	1	0	0	0	0	1	copy fasta	ZNF621	chr3	40519960	40544782