JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF621_chr3_40519960_40544782	0/0	t0052	7069	1	0	0	0	0	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0053	7069	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0054	7071	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0055	7070	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0056	7070	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0057	7070	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0058	7071	1	0	0	0	0	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0059	7070	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0060	7070	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0061	7070	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0062	7067	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0063	7069	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0064	7069	1	0	1	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0065	7070	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0066	7069	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0067	7068	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0068	7069	1	0	0	0	0	1	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0069	7069	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0070	7069	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	t0071	7069	1	1	0	0	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF622_chr5_16446519_16470800	1/1	t0001	274	388	86	70	184	14	32	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	t0002	274	5	5	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	t0003	274	1	1	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF623_chr8_143631019_143658730	0/0	t0001	2470	93	18	13	54	1	7	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/1	t0002	2470	87	4	22	36	9	15	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0003	2470	46	2	5	33	2	4	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0004	2470	39	4	14	14	2	5	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0005	2470	38	21	1	10	0	6	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0006	2470	18	16	2	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0007	2470	12	0	9	0	2	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0008	2470	8	0	0	6	2	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0009	2470	7	7	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0010	2470	4	4	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0011	2470	4	3	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0012	2470	3	0	0	3	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0013	2470	2	0	0	2	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0014	2470	2	2	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0015	2460	2	2	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0016	2470	2	0	0	2	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0017	2470	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0018	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0019	2470	1	0	1	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0020	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0021	2470	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0022	2470	1	0	0	0	0	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0023	2470	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0024	2470	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0025	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0026	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0027	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730