JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF623_chr8_143631019_143658730	0/0	t0028	2470	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0029	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0030	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0031	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0032	2470	1	0	1	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0033	2470	1	0	0	0	0	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	t0034	2470	1	0	0	1	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF624_chr17_16615734_16658850	1/0	t0001	1644	168	47	35	65	4	16	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0002	1644	81	12	13	51	2	3	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0003	1644	47	14	6	13	1	13	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/1	t0004	1637	38	1	12	18	1	5	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0005	1637	18	0	0	18	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0006	1644	17	15	2	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0007	1644	3	3	0	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0008	1633	2	0	0	2	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0009	1644	2	0	0	2	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0010	1644	1	0	0	0	0	1	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	t0011	1637	1	0	0	1	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF625_chr19_12139890_12161734	1/1	t0001	584	350	75	74	142	15	42	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	t0002	584	19	18	1	0	0	0	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	t0003	584	3	3	0	0	0	0	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	t0004	584	1	0	1	0	0	0	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	t0005	584	1	0	0	0	1	0	copy fasta	ZNF625	chr19	12139890	12161734
ZNF626_chr19_20614939_20666571	0/1	t0001	4487	72	2	22	28	4	15	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0002	4483	61	1	10	42	3	5	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0003	4487	57	12	7	31	1	6	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0004	4483	24	12	0	7	0	5	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0005	4484	19	1	3	11	1	3	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0006	4482	18	0	2	14	1	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0007	4489	16	3	6	4	0	3	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0008	4482	8	8	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0009	4482	6	5	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0010	4485	6	6	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0011	4482	5	1	3	0	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0012	4489	5	5	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0013	4482	4	0	1	3	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0014	4480	4	0	2	1	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0015	4486	3	3	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0016	4487	3	0	0	3	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0017	4483	3	0	0	3	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0018	4486	3	3	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0019	4486	2	2	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0020	4481	2	0	0	1	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0021	4482	2	2	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0022	4489	2	2	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0023	4487	2	2	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0024	4489	2	0	0	0	0	2	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0025	4478	2	0	0	2	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0026	4479	2	0	0	0	0	2	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0027	4479	2	0	0	2	0	0	copy fasta	ZNF626	chr19	20614939	20666571