JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF626_chr19_20614939_20666571	0/0	t0028	4483	2	0	2	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0029	4483	1	0	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0030	4486	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0031	4483	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0032	4482	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0033	4481	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0034	4486	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0035	4486	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0036	4486	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0037	4487	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0038	4487	1	0	0	0	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0039	4489	1	0	0	0	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0040	4489	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0041	4489	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0042	4487	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0043	4488	1	0	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0044	4482	1	0	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0045	4483	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	1/0	t0046	4477	1	0	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0047	4478	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0048	4478	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0049	4483	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0050	4480	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0051	4483	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0052	4483	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0053	4483	1	0	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0054	4483	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0055	4483	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0056	4482	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0057	4485	1	0	0	0	0	1	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0058	4483	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0059	4483	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0060	4487	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0061	4486	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0062	4481	1	0	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0063	4482	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0064	4483	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0065	4481	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0066	4484	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0067	4485	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0068	4488	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	t0069	4484	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF627_chr19_11592483_11624161	1/1	t0001	1418	189	55	30	79	4	19	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0002	1418	74	13	23	22	5	11	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0003	1418	28	3	12	11	2	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0004	1418	16	5	3	3	0	5	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0005	1418	4	4	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0006	1418	3	3	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0007	1418	2	1	0	0	0	1	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0008	1418	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161