JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf81_chr2_74409177_74426619	0/0	t0003	212	1	0	0	0	1	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf88_chr2_190175863_190208484	0/1	t0001	3748	195	29	40	85	12	28	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0002	3749	111	24	18	58	5	6	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0003	3749	41	4	1	32	0	4	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0004	3743	17	0	0	17	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0005	3749	9	9	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0006	3746	5	5	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	1/0	t0007	3748	5	4	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0008	3746	4	3	1	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0009	3751	3	0	1	0	0	2	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0010	3750	3	3	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0011	3748	2	2	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0012	3753	2	0	0	1	0	1	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0013	3749	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0014	3746	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0015	3746	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0016	3746	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0017	3749	1	0	0	0	0	1	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0018	3749	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0019	3749	1	0	0	0	0	1	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0020	3746	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0021	3749	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0022	3748	1	0	1	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0023	3748	1	0	0	0	0	1	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0024	3748	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0025	3748	1	0	0	0	1	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0026	3751	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0027	3753	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0028	3748	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0029	3750	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0030	3753	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0031	3743	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0032	3749	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0033	3749	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0034	3748	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	t0035	3748	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf92_chr2_97664713_97708066	0/0	t0001	342	167	72	37	43	6	9	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	1/1	t0002	342	115	21	21	51	2	18	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	t0003	342	18	0	0	18	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	t0004	342	7	0	0	4	0	3	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	t0005	342	3	1	0	2	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C3AR1_chr12_8051844_8071359	1/0	t0001	1986	179	41	24	98	4	11	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0002	1986	87	15	34	21	4	13	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/1	t0003	1986	64	5	18	28	4	8	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0004	1986	33	12	1	12	0	8	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0005	1986	9	8	1	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0006	1986	9	0	0	9	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0007	1986	6	4	2	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0008	1984	5	0	0	5	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0009	1986	4	4	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359