JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF630_chrX_48052516_48076640	0/0	t0024	1508	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0025	1503	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF638_chr2_71326782_71440061	0/1	t0001	551	290	71	62	110	10	36	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	1/0	t0002	551	54	15	2	30	2	4	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	t0003	551	2	2	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	t0004	551	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	t0005	551	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF639_chr3_179318031_179343583	1/1	t0001	4505	78	18	14	29	4	11	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0002	4506	76	4	24	39	3	6	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0003	4514	61	10	11	32	1	7	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0004	4509	25	2	3	15	2	3	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0005	4505	13	0	0	13	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0006	4507	11	10	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0007	4507	9	6	3	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0008	4514	9	0	3	6	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0009	4506	8	0	1	7	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0010	4506	7	5	2	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0011	4509	7	7	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0012	4507	7	0	0	2	1	4	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0013	4509	6	0	0	1	0	5	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0014	4508	6	4	2	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0015	4505	5	0	0	5	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0016	4511	5	3	2	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0017	4504	4	0	3	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0018	4510	4	1	0	2	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0019	4509	3	3	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0020	4514	3	2	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0021	4513	3	0	0	3	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0022	4509	2	0	1	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0023	4497	2	0	2	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0024	4510	2	2	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0025	4505	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0026	4505	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0027	4505	2	0	2	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0028	4507	2	0	0	0	2	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0029	4506	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0030	4506	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0031	4506	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0032	4509	2	1	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0033	4506	2	1	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0034	4514	2	2	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0035	4515	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0036	4506	2	0	0	2	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0037	4510	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0038	4514	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0039	4507	1	0	0	0	1	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0040	4511	1	0	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0041	4510	1	0	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0042	4509	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0043	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583