JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF639_chr3_179318031_179343583	0/0	t0044	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0045	4505	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0046	4510	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0047	4510	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0048	4505	1	0	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0049	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0050	4514	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0051	4508	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0052	4509	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0053	4508	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0054	4505	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0055	4505	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0056	4511	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0057	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0058	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0059	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0060	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0061	4506	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0062	4507	1	0	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0063	4507	1	0	0	0	0	1	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0064	4509	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0065	4507	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0066	4514	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0067	4510	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0068	4513	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0069	4513	1	0	0	1	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	t0070	4514	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF641_chr12_48332180_48355919	1/1	t0001	5953	158	12	29	101	3	11	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0002	5950	75	21	9	29	6	10	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0003	5953	51	4	13	25	2	7	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0004	5952	26	2	12	1	2	9	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0005	5953	22	0	3	19	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0006	5952	8	8	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0007	5952	7	5	2	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0008	5953	5	5	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0009	5953	4	4	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0010	5952	4	4	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0011	5953	4	4	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0012	5944	3	1	0	2	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0013	5940	3	0	2	0	0	1	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0014	5952	3	2	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0015	5953	2	0	2	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0016	5952	2	0	1	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0017	5950	2	2	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0018	5952	2	2	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0019	5953	2	0	0	2	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0020	5953	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0021	5950	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0022	5953	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0023	5953	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919