JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF641_chr12_48332180_48355919	0/0	t0024	5953	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0025	5953	1	0	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0026	5950	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0027	5951	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0028	5950	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0029	5950	1	0	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0030	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0031	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0032	5953	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0033	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0034	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0035	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0036	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0037	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0038	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0039	5953	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0040	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0041	5952	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0042	5951	1	0	0	0	1	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0043	5953	1	0	0	0	0	1	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	t0044	5952	1	0	0	0	0	1	copy fasta	ZNF641	chr12	48332180	48355919
ZNF644_chr1_90910304_91027035	1/1	t0001	1558	246	63	49	100	10	22	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0002	1558	29	6	4	8	3	8	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0003	1558	16	1	5	8	1	1	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0004	1559	7	1	1	3	0	2	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0005	1558	5	5	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0006	1559	3	0	1	1	0	1	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0007	1558	2	0	0	2	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0008	1558	2	0	2	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0009	1558	1	0	0	1	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0010	1558	1	0	1	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0011	1558	1	0	1	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	t0012	1558	1	0	0	1	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF646_chr16_31069422_31089196	1/0	t0001	1394	157	22	33	92	5	4	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0002	1394	101	20	25	26	7	23	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/1	t0003	1394	24	2	10	0	6	5	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0004	1394	18	18	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0005	1394	17	15	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0006	1394	6	6	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0007	1394	3	0	0	0	0	3	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0008	1394	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0009	1394	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0010	1394	1	0	0	0	0	1	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	t0011	1394	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF648_chr1_182049570_182066712	1/1	t0001	1943	247	51	47	117	6	24	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0002	1943	51	23	6	13	0	9	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0003	1943	43	1	5	33	2	2	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0004	1939	4	2	2	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0005	1943	4	3	1	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0006	1943	3	3	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712