JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF652_chr17_49284206_49367250	0/0	t0126	9797	1	1	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0127	9797	1	1	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0128	9805	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0129	9792	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0130	9808	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0131	9805	1	0	1	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0132	9807	1	0	0	0	1	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0133	9809	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0134	9793	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0135	10019	1	0	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF653_chr19_11478429_11510839	1/1	t0001	307	329	98	64	114	10	41	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	t0002	307	1	0	0	0	1	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	t0003	307	1	0	0	0	1	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	t0004	307	1	0	0	0	0	1	copy fasta	ZNF653	chr19	11478429	11510839
ZNF654_chr3_88054255_88149660	0/1	t0001	3076	97	14	27	45	4	6	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0002	3073	37	11	2	21	0	3	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0003	3077	18	17	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	1/0	t0004	3074	11	0	3	4	1	2	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0005	3074	11	1	5	2	1	2	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0006	3077	9	8	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0007	3073	8	6	2	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0008	3056	4	4	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0009	3077	3	3	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0010	3075	3	3	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0011	3074	2	2	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0012	3073	2	2	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0013	3074	2	1	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0014	3056	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0015	3074	1	0	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0016	3074	1	0	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0017	3074	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0018	3074	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0019	3076	1	0	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0020	3076	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0021	3076	1	0	0	0	0	1	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0022	3076	1	0	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0023	3074	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0024	3077	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0025	3077	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	t0026	3074	1	1	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF655_chr7_99553642_99581453	1/0	t0001	3043	231	16	35	136	9	34	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0002	3041	26	15	2	7	1	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0003	3045	25	18	2	1	3	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0004	3043	14	11	3	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0005	3043	12	0	10	2	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0006	3047	9	3	5	0	1	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0007	3043	7	6	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0008	3043	5	5	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/1	t0009	3043	4	0	0	0	2	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0010	3043	4	4	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453