JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF655_chr7_99553642_99581453	0/0	t0011	3045	4	4	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0012	3045	2	0	0	1	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0013	3043	2	1	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0014	3043	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0015	3043	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0016	3043	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0017	3043	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0018	3043	1	0	1	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0019	3043	1	0	1	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0020	3045	1	0	1	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0021	3047	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0022	3043	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0023	3043	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0024	3043	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0025	3043	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0026	3043	1	0	1	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0027	3043	1	0	1	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0028	3043	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0029	3045	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0030	3045	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0031	3045	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0032	3041	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0033	3041	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0034	3041	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0035	3041	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	t0036	3043	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF658_chr9_66895725_66926426	0/0	t0001	837	170	16	38	80	7	29	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	1/1	t0002	837	144	45	36	39	9	13	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0003	837	49	4	3	42	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0004	837	25	0	1	24	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0005	838	8	1	2	3	0	2	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0006	837	5	5	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0007	837	4	4	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0008	837	4	4	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0009	837	2	0	0	0	0	2	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0010	837	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0011	837	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0012	837	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0013	837	1	0	0	0	0	1	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0014	837	1	0	0	0	0	1	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0015	837	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0016	837	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0017	837	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0018	837	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	t0019	837	1	0	0	1	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF660_chr3_44579964_44604694	0/1	t0001	4837	122	17	37	48	6	13	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	1/0	t0002	4839	74	20	14	25	5	9	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0003	4833	22	12	6	0	3	1	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0004	4838	18	7	3	6	1	1	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0005	4833	12	9	3	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694