JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF660_chr3_44579964_44604694	0/0	t0006	4839	7	7	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0007	4833	6	1	3	0	0	2	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0008	4832	6	6	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0009	4837	4	4	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0010	4836	3	0	0	3	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0011	4833	3	3	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0012	4839	2	2	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0013	4837	2	2	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0014	4837	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0015	4836	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0016	4833	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0017	4837	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0018	4833	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0019	4833	1	0	0	0	0	1	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0020	4833	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0021	4837	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0022	4837	1	0	0	0	1	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0023	4837	1	0	0	0	0	1	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0024	4837	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0025	4837	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0026	4838	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0027	4839	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0028	4839	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0029	4839	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0030	4839	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0031	4833	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0032	4839	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0033	4829	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0034	4837	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0035	4837	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0036	4839	1	1	0	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0037	4837	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	t0038	4833	1	0	1	0	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF662_chr3_42901142_42924334	0/1	t0001	4095	246	34	51	115	11	34	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0002	4097	28	12	10	0	2	4	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0003	4096	25	8	2	11	0	4	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	1/0	t0004	4101	13	10	2	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0005	4102	12	0	0	12	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0006	4095	6	6	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0007	4101	4	4	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0008	4102	4	3	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0009	4094	4	0	0	3	1	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0010	4094	4	3	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0011	4101	3	1	2	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0012	4105	3	3	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0013	4095	3	0	0	2	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0014	4101	2	1	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0015	4101	2	0	0	2	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0016	4105	2	2	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0017	4091	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334