JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C3AR1_chr12_8051844_8071359	0/0	t0010	1986	3	0	3	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0011	1986	2	2	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0012	1986	2	0	0	2	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0013	1986	2	0	0	2	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0014	1986	2	0	0	2	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0015	1986	2	0	1	0	0	1	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0016	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0017	1986	1	1	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0018	1986	1	0	0	0	1	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0019	1986	1	0	0	0	0	1	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0020	1986	1	0	0	0	0	1	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0021	1967	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0022	1986	1	1	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0023	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0024	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0025	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0026	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0027	1986	1	0	0	0	1	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0028	1986	1	1	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0029	1986	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	t0030	1986	1	0	0	0	0	1	copy fasta	C3AR1	chr12	8051844	8071359
C3_chr19_6672704_6725650	1/1	t0001	240	348	82	69	139	12	44	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	t0002	240	20	7	3	2	2	6	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	t0003	240	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	t0004	240	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3orf14_chr3_62314022_62341213	1/1	t0001	2983	342	79	60	156	7	38	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0002	2983	11	8	1	0	1	1	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0003	2984	10	0	1	2	1	6	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0004	2983	5	5	0	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0005	2983	3	1	1	0	1	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0006	2983	3	0	3	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0007	2983	2	0	0	2	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0008	2983	1	1	0	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0009	2983	1	1	0	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0010	2983	1	0	0	1	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0011	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0012	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0013	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0014	2983	1	1	0	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0015	2983	1	0	0	1	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0016	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0017	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0018	2983	1	0	1	0	0	0	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	t0019	2983	1	0	0	0	0	1	copy fasta	C3orf14	chr3	62314022	62341213
C3orf18_chr3_50553025_50572747	1/1	t0001	2169	335	63	69	154	14	33	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0002	2169	15	1	0	10	0	4	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0003	2169	7	7	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0004	2169	6	6	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0005	2169	3	0	3	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0006	2169	3	3	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747