JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF662_chr3_42901142_42924334	0/0	t0018	4094	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0019	4097	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0020	4097	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0021	4098	1	0	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0022	4100	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0023	4101	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0024	4101	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0025	4101	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0026	4101	1	0	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0027	4102	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0028	4105	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0029	4095	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0030	4095	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0031	4095	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0032	4095	1	0	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0033	4096	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0034	4096	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0035	4096	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0036	4095	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	t0037	4095	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF664_chr12_123968215_124020427	1/1	t0001	3527	143	23	23	68	7	20	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0002	3527	41	27	9	0	1	4	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0003	3527	31	3	5	20	1	2	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0004	3527	21	19	2	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0005	3527	13	0	8	0	3	2	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0006	3527	7	0	5	0	0	2	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0007	3528	4	3	1	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0008	3527	3	0	3	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0009	3527	2	2	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0010	3527	2	1	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0011	3527	2	2	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0012	3528	2	2	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0013	3527	2	1	1	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0014	3527	2	0	0	2	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0015	3527	1	0	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0016	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0017	3527	1	0	1	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0018	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0019	3491	1	0	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0020	3527	1	0	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0021	3527	1	0	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0022	3527	1	1	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0023	3527	1	1	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0024	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0025	3527	1	0	0	0	0	1	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0026	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0027	3528	1	1	0	0	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0028	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF664_chr12_123968215_124020427	0/0	t0029	3527	1	0	0	1	0	0	copy fasta	ZNF664	chr12	123968215	124020427
ZNF665_chr19_53157424_53198358	0/0	t0001	2120	185	12	34	100	10	29	copy fasta	ZNF665	chr19	53157424	53198358