JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF665_chr19_53157424_53198358	0/1	t0002	2122	64	29	12	19	1	2	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0003	2122	41	7	8	17	5	4	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	1/0	t0004	2122	30	9	6	13	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0005	2121	7	0	2	4	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0006	2120	7	7	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0007	2123	7	4	1	2	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0008	2119	6	0	2	3	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0009	2122	4	0	1	3	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0010	2123	4	4	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0011	2123	3	1	1	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0012	2123	3	2	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0013	2122	3	0	0	3	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0014	2121	2	0	1	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0015	2119	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0016	2121	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0017	2121	2	1	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0018	2138	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0019	2121	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0020	2122	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0021	2122	1	0	0	0	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0022	2121	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0023	2120	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0024	2120	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0025	2121	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0026	2120	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0027	2121	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0028	2120	1	0	0	0	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0029	2121	1	0	0	0	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0030	2120	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0031	2120	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0032	2120	1	0	0	0	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0033	2122	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0034	2124	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0035	2122	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0036	2123	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0037	2123	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0038	2122	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0039	2122	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0040	2121	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0041	2141	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0042	2139	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0043	2122	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0044	2123	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0045	2121	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0046	2123	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0047	2121	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0048	2123	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0049	2122	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	t0050	2122	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF667_chr19_56434329_56482345	0/1	t0001	2570	122	26	24	56	4	11	copy fasta	ZNF667	chr19	56434329	56482345