JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF669_chr1_247094962_247109356	0/0	t0003	570	13	0	12	0	0	1	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0004	570	12	11	1	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0005	570	10	10	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0006	565	4	0	0	3	0	1	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0007	566	4	4	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0008	570	4	4	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0009	570	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0010	566	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0011	570	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0012	570	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0013	570	1	0	0	1	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0014	570	1	0	0	1	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0015	570	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0016	570	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0017	570	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0018	570	1	0	0	0	0	1	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0019	570	1	0	0	1	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0020	570	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF66_chr19_20771304_20814995	0/0	t0001	2818	99	13	12	64	2	8	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	1/0	t0002	2818	79	17	17	37	4	3	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0003	2818	52	2	5	33	2	10	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0004	2813	41	9	7	22	1	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0005	2817	13	3	3	1	1	5	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0006	2813	10	9	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0007	2819	10	0	5	0	0	5	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0008	2816	9	3	3	0	1	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0009	2818	8	0	5	1	0	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/1	t0010	2818	5	0	2	0	2	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0011	2818	5	5	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0012	2829	5	0	2	0	1	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0013	2818	4	0	0	4	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0014	2829	4	4	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0015	2817	3	0	0	3	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0016	2817	3	3	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0017	2817	3	3	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0018	2818	3	0	1	0	0	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0019	2829	3	3	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0020	2818	3	0	0	3	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0021	2816	2	0	0	2	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0022	2817	2	1	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0023	2813	2	2	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0024	2818	2	2	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0025	2829	2	0	1	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0026	2818	2	0	1	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0027	2817	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0028	2817	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0029	2817	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0030	2813	1	0	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0031	2813	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0032	2813	1	0	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995