JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF670_chr1_247029637_247083811	0/0	t0033	3032	2	0	0	1	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0034	3036	2	1	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0035	3042	2	1	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0036	3028	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0037	3034	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0038	3040	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0039	3028	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0040	3032	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0041	3038	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0042	3032	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0043	3034	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0044	3036	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0045	3038	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0046	3044	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0047	3040	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0048	3034	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0049	3036	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0050	3038	1	0	0	0	1	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0051	3040	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0052	3044	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0053	3038	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0054	3014	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0055	3026	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0056	3028	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0057	3028	1	0	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0058	3030	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0059	3032	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0060	3034	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0061	3038	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0062	3040	1	0	0	0	1	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0063	3044	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0064	3046	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0065	3040	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0066	3044	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0067	3028	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF671_chr19_57714751_57732624	0/0	t0001	827	179	60	21	86	5	7	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/1	t0002	827	123	24	18	58	5	17	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	1/0	t0003	827	103	1	28	47	4	22	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0004	827	4	4	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0005	827	4	2	2	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0006	827	3	3	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0007	827	3	0	3	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0008	827	2	0	0	0	2	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0009	827	2	2	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0010	827	1	0	1	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0011	827	1	0	1	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	t0012	827	1	0	0	1	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF672_chr1_248833224_248854517	1/1	t0001	1687	289	58	62	122	11	34	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0002	1687	68	10	7	46	2	3	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0003	1687	40	0	0	36	0	4	copy fasta	ZNF672	chr1	248833224	248854517