Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF676_chr19_22174089_22201951	0/0	t0009	1180	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF677_chr19_53230381_53259873	0/1	t0001	1758	186	13	30	117	3	22	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	1/0	t0002	1758	98	16	16	46	8	11	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0003	1758	85	36	28	10	4	7	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0004	1758	12	11	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0005	1758	8	8	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0006	1758	5	4	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0007	1758	4	4	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0008	1758	3	3	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0009	1758	1	0	0	1	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0010	1758	1	0	0	1	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0011	1758	1	0	0	0	1	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0012	1758	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	t0013	1758	1	0	0	1	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF678_chr1_227558556_227667461	0/0	t0001	6962	83	18	20	37	3	5	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0002	6963	68	11	14	33	2	8	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	1/1	t0003	6966	61	8	19	19	4	9	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0004	6965	24	13	3	3	2	3	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0005	6963	23	0	5	13	3	2	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0006	6964	19	3	6	2	2	6	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0007	6963	17	0	1	16	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0008	6966	14	0	1	13	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0009	6965	9	8	1	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0010	6965	6	6	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0011	6964	5	0	2	3	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0012	6961	5	5	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0013	6964	5	5	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0014	6961	4	0	0	4	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0015	6965	4	4	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0016	6964	4	1	0	3	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0017	6963	3	0	1	2	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0018	6962	2	0	0	2	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0019	6963	2	0	0	2	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0020	6966	2	0	0	2	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0021	6963	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0022	6962	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0023	6963	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0024	6955	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0025	6963	1	0	0	0	1	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0026	6966	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0027	6962	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0028	6962	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0029	6962	1	0	1	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0030	6962	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0031	6963	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0032	6963	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0033	6966	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0034	6966	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0035	6965	1	0	0	0	1	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0036	6961	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461