Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF678_chr1_227558556_227667461	0/0	t0037	6962	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0038	6966	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0039	6966	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0040	6963	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0041	6962	1	0	1	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0042	6962	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0043	6965	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0044	6964	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0045	6964	1	0	1	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0046	6964	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0047	6964	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0048	6964	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0049	6965	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0050	6966	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0051	6965	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0052	6965	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0053	6965	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	t0054	6964	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF679_chr7_64223474_64271931	1/1	t0001	332	407	96	73	181	14	41	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	t0002	332	13	0	3	10	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	t0003	332	1	0	0	1	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	t0004	332	1	0	0	0	0	1	copy fasta	ZNF679	chr7	64223474	64271931
ZNF680_chr7_64514878_64568071	1/0	t0001	1401	101	9	16	59	4	12	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0002	1401	65	1	8	51	0	5	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/1	t0003	1401	62	13	13	27	4	4	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0004	1401	51	33	10	0	2	6	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0005	1401	47	4	11	25	2	5	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0006	1401	26	8	5	10	0	3	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0007	1397	11	10	1	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0008	1401	5	5	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0009	1401	2	0	2	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0010	1401	2	0	0	2	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0011	1401	2	2	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0012	1401	1	0	0	0	0	1	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0013	1401	1	1	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0014	1401	1	0	1	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0015	1401	1	0	0	0	1	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0016	1401	1	0	0	1	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0017	1401	1	1	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0018	1401	1	0	0	0	1	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0019	1401	1	0	0	1	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0020	1401	1	1	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	t0021	1401	1	0	1	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF681_chr19_23734195_23763891	0/1	t0001	4561	258	55	33	137	13	19	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0002	4561	26	2	4	9	1	10	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0003	4562	14	2	1	10	0	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0004	4562	13	1	8	0	1	3	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0005	4561	10	0	9	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0006	4561	9	0	6	1	1	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0007	4562	7	7	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891