Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF681_chr19_23734195_23763891	1/0	t0008	4560	7	5	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0009	4561	7	0	5	0	0	2	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0010	4559	6	5	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0011	4559	4	0	0	4	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0012	4556	4	0	0	4	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0013	4561	3	0	0	3	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0014	4561	3	3	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0015	4560	2	2	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0016	4561	2	2	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0017	4561	2	2	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0018	4562	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0019	4564	1	0	0	0	0	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0020	4563	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0021	4560	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0022	4562	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0023	4561	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0024	4561	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0025	4561	1	0	0	0	0	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0026	4561	1	0	0	0	0	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0027	4561	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0028	4561	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0029	4561	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0030	4561	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0031	4562	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0032	4561	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0033	4561	1	0	0	0	0	1	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	t0034	4557	1	0	0	1	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF682_chr19_19999418_20044505	0/1	t0001	1750	168	40	44	51	7	25	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	1/0	t0002	1748	70	3	8	54	3	1	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0003	1750	48	7	9	29	0	3	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0004	1735	34	23	5	4	0	2	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0005	1750	13	0	0	13	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0006	1750	12	8	0	3	1	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0007	1735	6	0	0	6	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0008	1748	5	1	1	3	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0009	1750	4	4	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0010	1735	4	4	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0011	1750	3	0	0	3	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0012	1750	2	0	0	2	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0013	1750	2	0	0	2	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0014	1750	2	0	0	0	0	2	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0015	1750	1	0	0	0	0	1	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0016	1735	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0017	1750	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0018	1750	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0019	1750	1	0	1	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0020	1748	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0021	1750	1	0	0	0	1	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0022	1750	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0023	1748	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505