Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTR8_chr3_53862066_53887152	0/0	t0020	1704	1	0	0	1	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0021	1705	1	0	0	1	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0022	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTRT1_chrX_128045962_128057403	1/1	t0001	312	258	58	50	118	6	24	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	t0002	312	22	12	6	1	2	1	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	t0003	312	2	1	1	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	t0004	312	1	1	0	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	t0005	312	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	t0006	312	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT2_chr1_3016467_3027903	1/1	t0001	304	321	84	76	115	14	30	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0002	304	39	5	1	30	0	3	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0003	304	2	0	0	2	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0004	304	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0005	304	1	0	1	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0006	304	1	0	0	1	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	t0007	304	1	0	0	0	0	1	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT3_chr3_169761921_169774561	1/1	t0001	553	399	80	74	186	14	43	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	t0002	553	13	12	1	0	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	t0003	553	4	2	1	0	0	1	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	t0004	553	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	t0005	553	1	0	0	1	0	0	copy fasta	ACTRT3	chr3	169761921	169774561
ACVR1B_chr12_51946699_52002078	0/1	t0001	3011	113	19	14	62	3	14	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0002	3012	93	16	17	50	0	10	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0003	3015	19	13	0	5	0	1	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0004	3014	16	15	1	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0005	3012	10	0	8	0	2	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	1/0	t0006	3014	9	4	1	1	1	1	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0007	3012	9	3	0	3	1	2	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0008	3011	7	0	6	0	1	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0009	3011	6	0	2	0	2	2	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0010	3012	6	0	3	3	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0011	3012	3	1	2	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0012	3011	3	3	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0013	3012	3	3	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0014	3012	3	0	0	3	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0015	3012	3	1	2	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0016	3014	2	2	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0017	3011	2	0	0	2	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0018	3012	2	1	1	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0019	3011	2	1	1	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0020	3011	2	2	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0021	3014	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0022	3015	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0023	3011	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0024	3011	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0025	3011	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0026	3012	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0027	3000	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0028	3011	1	0	0	1	0	0	copy fasta	ACVR1B	chr12	51946699	52002078
ACVR1B_chr12_51946699_52002078	0/0	t0029	3011	1	1	0	0	0	0	copy fasta	ACVR1B	chr12	51946699	52002078