JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C3orf18_chr3_50553025_50572747	0/0	t0007	2169	2	0	2	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0008	2169	2	2	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0009	2169	1	1	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0010	2169	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0011	2187	1	0	0	0	0	1	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0012	2169	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0013	2169	1	1	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0014	2169	1	1	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0015	2169	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0016	2169	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	t0017	2169	1	1	0	0	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf20_chr3_14670141_14778036	0/1	t0001	572	278	59	52	118	11	37	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	1/0	t0002	572	81	17	12	48	0	3	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	t0003	583	6	6	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	t0004	572	6	4	2	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	t0005	572	4	2	2	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	t0006	572	4	0	4	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	t0007	572	1	0	0	0	1	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf22_chr3_126544692_126563932	0/0	t0001	523	206	30	40	106	7	23	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/1	t0002	523	97	28	25	29	7	7	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	1/0	t0003	523	65	34	6	18	0	6	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0004	523	17	6	3	5	0	3	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0005	523	10	0	1	6	1	2	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0006	523	6	0	2	2	1	1	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0007	523	3	0	0	3	0	0	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0008	523	2	0	0	2	0	0	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0009	523	1	0	1	0	0	0	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	t0010	523	1	0	0	1	0	0	copy fasta	C3orf22	chr3	126544692	126563932
C3orf33_chr3_155757617_155811278	1/0	t0001	927	230	40	48	111	9	21	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/1	t0002	927	122	22	25	53	4	17	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0003	927	12	11	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0004	927	12	11	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0005	927	11	2	5	0	1	3	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0006	927	7	0	0	7	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0007	927	4	4	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0008	927	3	3	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0009	927	2	2	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0010	927	1	0	0	1	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0011	927	1	0	0	0	0	1	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	t0012	927	1	1	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf38_chr3_88144959_88162965	0/1	t0001	1426	196	33	33	102	8	19	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0002	1425	59	18	11	24	1	5	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0003	1425	16	13	1	1	0	1	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	1/0	t0004	1425	10	0	3	4	0	2	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0005	1425	9	9	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0006	1426	7	0	0	7	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0007	1425	6	6	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0008	1425	5	5	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0009	1426	3	0	0	3	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	t0010	1425	3	2	1	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965