Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF682_chr19_19999418_20044505	0/0	t0024	1750	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	t0025	1748	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF683_chr1_26356634_26377750	1/1	t0001	114	399	96	76	172	16	37	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	t0002	114	3	0	0	0	0	3	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	t0003	114	3	0	0	3	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	t0004	114	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF684_chr1_40526637_40553167	0/1	t0001	883	202	42	34	90	8	27	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	1/0	t0002	883	147	30	26	71	5	14	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0003	883	15	9	4	0	2	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0004	883	6	4	2	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0005	883	4	0	3	0	1	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0006	883	4	0	2	0	2	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0007	881	3	3	0	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0008	883	1	0	1	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0009	883	1	0	0	0	0	1	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	t0010	883	1	0	0	1	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF687_chr1_151277299_151297176	0/0	t0001	1082	174	37	32	78	7	20	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/1	t0002	1082	173	37	34	72	10	19	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	1/0	t0003	1082	7	6	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0004	1086	4	4	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0005	1086	3	0	0	0	1	2	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0006	1086	3	3	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0007	1086	3	2	1	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0008	1082	2	2	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0009	1082	2	0	0	2	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0010	1082	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0011	1082	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0012	1070	1	0	1	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0013	1082	1	0	0	0	0	1	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	t0014	1082	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF688_chr16_30564726_30576714	1/1	t0001	276	293	83	52	108	18	30	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	t0002	276	7	7	0	0	0	0	copy fasta	ZNF688	chr16	30564726	30576714
ZNF689_chr16_30597558_30615389	1/1	t0001	2055	170	21	48	85	8	6	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0002	2054	96	33	15	21	5	22	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0003	2053	34	21	6	5	1	1	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0004	2055	12	11	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0005	2054	7	0	0	7	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0006	2054	4	0	0	4	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0007	2055	4	0	3	0	0	1	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0008	2054	3	3	0	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0009	2054	2	2	0	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0010	2054	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0011	2055	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0012	2054	1	0	0	0	0	1	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0013	2053	1	0	0	0	0	1	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0014	2055	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	t0015	2053	1	1	0	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF691_chr1_42841613_42857477	1/1	t0001	927	399	83	53	219	9	33	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0002	927	39	14	12	0	5	8	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0003	927	1	0	0	0	0	1	copy fasta	ZNF691	chr1	42841613	42857477