Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF691_chr1_42841613_42857477	0/0	t0004	894	1	0	1	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0005	927	1	0	0	1	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0006	927	1	1	0	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0007	927	1	0	1	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	t0008	927	1	0	1	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF692_chr1_248845008_248864085	1/1	t0001	383	341	80	54	157	17	31	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	t0002	384	65	10	10	39	1	5	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	t0003	383	3	0	0	3	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	t0004	383	2	2	0	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	t0005	383	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF695_chr1_246980323_247013057	0/0	t0001	1797	135	21	41	42	8	23	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	1/0	t0002	1794	87	45	21	7	4	9	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0003	1794	11	2	1	0	1	7	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0004	1794	6	6	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0005	1794	5	5	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0006	1794	5	3	1	0	1	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0007	1794	4	4	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0008	1794	3	2	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0009	1794	2	2	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/1	t0010	1797	2	0	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0011	1794	2	2	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0012	1797	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0013	1794	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0014	1797	1	0	0	1	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0015	1797	1	0	0	0	0	1	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0016	1794	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	t0017	1794	1	1	0	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF696_chr8_143286417_143304952	0/1	t0001	3534	204	6	46	121	5	25	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0002	3534	64	28	12	9	3	12	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	1/0	t0003	3534	38	4	7	21	1	4	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0004	3534	26	0	0	24	0	2	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0005	3532	17	17	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0006	3534	8	1	5	0	2	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0007	3534	8	7	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0008	3534	5	5	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0009	3534	5	5	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0010	3538	4	4	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0011	3535	4	2	2	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0012	3534	3	0	0	3	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0013	3534	3	0	1	0	2	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0014	3532	3	3	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0015	3534	2	0	2	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0016	3534	2	2	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0017	3534	2	0	0	2	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0018	3534	2	0	0	2	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0019	3534	2	0	1	0	1	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0020	3534	2	2	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0021	3534	2	0	0	2	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0022	3534	2	0	0	2	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0023	3518	1	0	0	0	1	0	copy fasta	ZNF696	chr8	143286417	143304952