Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF696_chr8_143286417_143304952	0/0	t0024	3533	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0025	3534	1	0	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0026	3534	1	0	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0027	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0028	3534	1	0	0	0	0	1	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0029	3533	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0030	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0031	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0032	3532	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0033	3533	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0034	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0035	3532	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0036	3533	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0037	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0038	3534	1	0	0	1	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0039	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0040	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0041	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0042	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0043	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0044	3534	1	0	0	0	1	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0045	3534	1	0	1	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0046	3534	1	1	0	0	0	0	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0047	3534	1	0	0	0	0	1	copy fasta	ZNF696	chr8	143286417	143304952
ZNF696_chr8_143286417_143304952	0/0	t0048	3534	1	0	0	0	0	1	copy fasta	ZNF696	chr8	143286417	143304952
ZNF697_chr1_119614377_119653266	1/1	t0001	3942	60	2	18	20	8	10	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0002	3951	55	2	14	32	2	5	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0003	3938	26	1	0	23	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0004	3943	24	6	5	10	2	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0005	3943	18	1	3	12	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0006	3946	17	2	2	11	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0007	3943	15	2	0	9	0	4	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0008	3955	14	0	5	9	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0009	3955	13	11	1	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0010	3951	11	2	1	6	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0011	3951	11	7	0	4	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0012	3947	7	0	3	3	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0013	3947	7	3	2	0	1	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0014	3959	7	0	4	0	1	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0015	3963	6	0	3	3	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0016	3943	5	0	0	5	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0017	3951	5	0	1	4	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0018	3950	5	3	1	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0019	3939	4	4	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0020	3943	4	0	0	1	0	3	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0021	3955	4	4	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0022	3943	3	3	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0023	3943	3	0	3	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0024	3947	3	0	1	0	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0025	3955	3	1	0	2	0	0	copy fasta	ZNF697	chr1	119614377	119653266