Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF701_chr19_52565287_52592174	0/0	t0021	3841	4	0	0	4	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0022	3834	4	0	4	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0023	3848	4	2	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0024	3835	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0025	3833	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0026	3833	3	0	3	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	1/0	t0027	3833	3	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0028	3833	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0029	3834	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0030	3847	3	3	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0031	3833	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0032	3841	3	0	0	3	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0033	3833	3	1	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0034	3849	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0035	3844	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0036	3844	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0037	3829	2	1	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0038	3844	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0039	3844	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0040	3833	2	0	0	0	2	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0041	3850	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0042	3850	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0043	3835	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0044	3835	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0045	3834	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0046	3833	2	0	0	1	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0047	3833	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0048	3833	2	0	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0049	3833	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0050	3833	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0051	3848	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0052	3834	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0053	3833	2	0	1	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0054	3833	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0055	3833	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0056	3834	2	0	0	0	2	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0057	3833	2	0	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0058	3847	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0059	3847	2	1	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0060	3847	2	1	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0061	3847	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0062	3848	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0063	3846	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0064	3848	2	1	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0065	3848	2	2	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0066	3841	2	0	1	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0067	3834	2	0	0	0	2	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0068	3841	2	0	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0069	3841	2	0	0	2	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0070	3835	1	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174