Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF701_chr19_52565287_52592174	0/0	t0171	3833	1	0	0	0	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0172	3843	1	1	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0173	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0174	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0175	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0176	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0177	3835	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0178	3833	1	0	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0179	3834	1	0	0	0	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0180	3848	1	0	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0181	3848	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0182	3833	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0183	3833	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0184	3833	1	0	0	0	1	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0185	3844	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0186	3843	1	0	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0187	3842	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0188	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0189	3841	1	0	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0190	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0191	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0192	3841	1	0	0	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0193	3841	1	0	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0194	3841	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0195	3797	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0196	3718	1	0	0	0	0	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF703_chr8_37690782_37705019	1/1	t0001	1544	209	69	42	57	16	23	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0002	1544	22	0	0	22	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0003	1544	13	0	4	3	0	6	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0004	1544	9	9	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0005	1544	4	0	3	0	0	1	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0006	1544	2	1	1	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0007	1544	2	2	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0008	1544	1	0	0	1	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0009	1544	1	0	0	1	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0010	1544	1	0	1	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0011	1526	1	0	1	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0012	1544	1	1	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0013	1544	1	1	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF703_chr8_37690782_37705019	0/0	t0014	1544	1	1	0	0	0	0	copy fasta	ZNF703	chr8	37690782	37705019
ZNF704_chr8_80623451_80879781	0/0	t0001	13148	22	5	6	3	2	6	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0002	13148	14	0	5	1	4	4	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0003	13153	7	6	1	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0004	13152	6	0	4	0	1	1	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0005	13152	6	5	1	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	1/0	t0006	13148	4	1	1	0	0	1	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0007	13148	4	4	0	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0008	13156	3	3	0	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0009	13152	3	3	0	0	0	0	copy fasta	ZNF704	chr8	80623451	80879781
ZNF704_chr8_80623451_80879781	0/0	t0010	13154	3	1	1	1	0	0	copy fasta	ZNF704	chr8	80623451	80879781