Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF705A_chr12_8152015_8185046	0/0	t0012	2613	1	0	0	1	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	t0013	2613	1	0	0	0	0	1	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705A_chr12_8152015_8185046	0/0	t0014	2613	1	0	0	1	0	0	copy fasta	ZNF705A	chr12	8152015	8185046
ZNF705B_chr8_7921337_7957413	0/0	t0001	305	33	2	5	12	5	9	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	t0002	305	25	1	6	11	2	5	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	t0003	305	17	9	2	3	1	2	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	t0004	305	4	3	1	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	t0005	305	2	0	0	2	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705B_chr8_7921337_7957413	0/0	t0006	305	1	1	0	0	0	0	copy fasta	ZNF705B	chr8	7921337	7957413
ZNF705D_chr8_12084338_12120516	0/0	t0001	2780	2	2	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705D_chr8_12084338_12120516	0/0	t0002	2781	1	1	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705D_chr8_12084338_12120516	0/0	t0003	2781	1	1	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705D_chr8_12084338_12120516	0/1	t0004	2781	1	0	0	0	0	0	copy fasta	ZNF705D	chr8	12084338	12120516
ZNF705G_chr8_7350517_7390558	1/0	t0001	2742	132	19	16	81	6	9	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0002	2742	50	3	12	18	4	13	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0003	2742	35	1	3	22	0	9	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0004	2742	15	5	0	10	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0005	2742	6	6	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0006	2742	6	1	2	3	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0007	2742	3	3	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0008	2742	3	3	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0009	2742	2	0	0	0	0	2	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0010	2742	2	2	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/1	t0011	2742	2	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0012	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0013	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0014	2742	1	0	0	0	1	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0015	2742	1	0	0	0	1	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0016	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0017	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0018	2742	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0019	2742	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0020	2742	1	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0021	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0022	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0023	2742	1	0	0	0	0	1	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0024	2742	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0025	2742	1	1	0	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0026	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0027	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0028	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0029	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0030	2742	1	0	0	0	0	1	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0031	2742	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0032	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0033	2742	1	0	0	0	0	1	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0034	2742	1	0	0	1	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF705G_chr8_7350517_7390558	0/0	t0035	2742	1	0	1	0	0	0	copy fasta	ZNF705G	chr8	7350517	7390558
ZNF706_chr8_101192052_101210673	0/1	t0001	2442	324	76	63	147	6	31	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0002	2443	12	4	1	5	0	2	copy fasta	ZNF706	chr8	101192052	101210673