Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF706_chr8_101192052_101210673	0/0	t0003	2442	7	6	1	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0004	2442	4	0	2	0	2	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0005	2443	3	3	0	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0006	2425	3	0	0	0	1	2	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	1/0	t0007	2442	3	0	0	2	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0008	2425	3	0	2	0	0	1	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0009	2441	2	0	0	0	1	1	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0010	2429	1	0	0	0	0	1	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0011	2442	1	1	0	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0012	2442	1	0	1	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0013	2442	1	1	0	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0014	2442	1	0	0	1	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0015	2442	1	0	0	1	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0016	2443	1	1	0	0	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0017	2442	1	0	0	1	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF706_chr8_101192052_101210673	0/0	t0018	2442	1	0	0	1	0	0	copy fasta	ZNF706	chr8	101192052	101210673
ZNF707_chr8_143679479_143700385	0/1	t0001	1070	178	34	51	50	11	31	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0002	1070	117	17	9	82	1	8	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0003	1070	70	1	9	54	2	4	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0004	1070	12	0	10	2	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0005	1070	12	10	1	0	0	1	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0006	1070	10	9	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0007	1070	8	8	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0008	1070	7	6	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0009	1070	5	5	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0010	1070	4	4	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0011	1070	3	0	0	1	0	2	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0012	1070	1	0	0	0	0	1	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0013	1070	1	0	0	0	0	1	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0014	1070	1	0	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0015	1070	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0016	1070	1	1	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0017	1070	1	1	0	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0018	1108	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0019	1070	1	0	0	1	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF707_chr8_143679479_143700385	0/0	t0020	1070	1	0	1	0	0	0	copy fasta	ZNF707	chr8	143679479	143700385
ZNF708_chr19_21286160_21334410	0/0	t0001	2316	163	50	31	57	4	21	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	1/0	t0002	2313	57	1	3	48	0	4	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0003	2316	47	7	17	15	2	6	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/1	t0004	2316	30	1	13	6	4	5	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0005	2316	8	3	1	3	0	1	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0006	2313	7	6	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0007	2313	6	6	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0008	2313	4	0	1	0	2	1	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0009	2316	3	3	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0010	2316	3	0	0	3	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0011	2313	3	3	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0012	2316	3	0	0	3	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0013	2313	2	2	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0014	2313	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410