Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF708_chr19_21286160_21334410	0/0	t0015	2316	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0016	2316	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0017	2316	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0018	2316	1	0	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0019	2316	1	0	0	1	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0020	2316	1	1	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0021	2316	1	0	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0022	2316	1	1	0	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF708_chr19_21286160_21334410	0/0	t0023	2316	1	0	1	0	0	0	copy fasta	ZNF708	chr19	21286160	21334410
ZNF709_chr19_12456184_12489816	0/0	t0001	2969	126	33	18	58	1	16	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	1/1	t0002	2972	121	24	19	67	2	7	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0003	2971	44	5	15	18	4	2	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0004	2972	17	16	1	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0005	2976	13	7	1	0	1	4	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0006	2971	8	2	1	3	1	1	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0007	2970	6	1	2	1	0	2	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0008	2972	3	1	1	0	1	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0009	2969	2	0	0	2	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0010	2971	2	2	0	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0011	2972	2	2	0	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0012	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0013	2969	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0014	2970	1	0	0	0	0	1	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0015	2970	1	1	0	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0016	2971	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0017	2971	1	1	0	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0018	2971	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0019	2971	1	0	1	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0020	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0021	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0022	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0023	2972	1	0	0	0	0	1	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0024	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0025	2972	1	1	0	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0026	2972	1	0	0	1	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF709_chr19_12456184_12489816	0/0	t0027	2972	1	0	1	0	0	0	copy fasta	ZNF709	chr19	12456184	12489816
ZNF70_chr22_23733682_23756112	1/0	t0001	5600	86	8	31	23	8	15	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0002	5600	62	0	4	50	1	7	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0003	5601	35	5	7	15	0	8	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0004	5601	33	0	7	23	2	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0005	5601	15	0	2	9	1	3	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/1	t0006	5601	11	0	0	7	0	3	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0007	5600	11	0	2	8	1	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0008	5602	11	0	2	9	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0009	5594	10	10	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0010	5600	10	0	9	0	1	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0011	5600	8	0	2	6	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0012	5601	6	6	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0013	5603	6	5	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0014	5603	6	6	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112