Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF70_chr22_23733682_23756112	0/0	t0015	5601	5	0	1	4	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0016	5600	5	0	0	5	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0017	5601	4	2	2	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0018	5600	3	0	2	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0019	5604	3	3	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0020	5601	3	2	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0021	5601	3	0	2	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0022	5600	3	3	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0023	5600	3	3	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0024	5601	3	2	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0025	5602	2	0	0	1	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0026	5600	2	0	2	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0027	5602	2	0	0	2	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0028	5602	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0029	5603	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0030	5602	2	1	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0031	5600	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0032	5600	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0033	5599	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0034	5602	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0035	5601	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0036	5602	2	2	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0037	5600	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0038	5624	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0039	5625	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0040	5625	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0041	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0042	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0043	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0044	5600	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0045	5602	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0046	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0047	5602	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0048	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0049	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0050	5594	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0051	5602	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0052	5600	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0053	5601	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0054	5601	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0055	5600	1	0	0	0	1	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0056	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0057	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0058	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0059	5601	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0060	5602	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0061	5602	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0062	5603	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0063	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0064	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112