Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF70_chr22_23733682_23756112	0/0	t0065	5601	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0066	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0067	5600	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0068	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0069	5600	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0070	5600	1	0	0	0	1	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0071	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0072	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0073	5602	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0074	5594	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0075	5600	1	0	0	0	0	1	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0076	5602	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0077	5601	1	0	1	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0078	5599	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0079	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0080	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0081	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0082	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0083	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0084	5603	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0085	5589	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0086	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0087	5594	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0088	5601	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0089	5601	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0090	5602	1	0	0	1	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0091	5602	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0092	5602	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF70_chr22_23733682_23756112	0/0	t0093	5600	1	1	0	0	0	0	copy fasta	ZNF70	chr22	23733682	23756112
ZNF710_chr15_89996324_90087191	0/0	t0001	2681	58	18	13	16	2	9	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0002	2682	48	2	14	24	3	5	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0003	2681	46	1	5	29	2	9	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	1/0	t0004	2682	43	15	9	14	2	2	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0005	2682	18	16	2	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/1	t0006	2681	13	5	3	0	2	2	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0007	2681	11	11	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0008	2681	7	5	2	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0009	2682	5	2	1	0	1	1	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0010	2682	3	3	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0011	2682	3	0	3	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0012	2681	2	2	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0013	2682	2	0	0	0	0	2	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0014	2682	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0015	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0016	2681	1	0	0	1	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0017	2682	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0018	2682	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0019	2682	1	0	0	0	0	1	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0020	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0021	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191