Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF710_chr15_89996324_90087191	0/0	t0022	2682	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0023	2681	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0024	2681	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0025	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0026	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0027	2681	1	0	0	0	0	1	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0028	2682	1	0	0	1	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0029	2682	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0030	2682	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0031	2682	1	0	0	0	0	1	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0032	2681	1	0	0	1	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0033	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0034	2681	1	0	0	0	0	1	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0035	2681	1	1	0	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF710_chr15_89996324_90087191	0/0	t0036	2681	1	0	1	0	0	0	copy fasta	ZNF710	chr15	89996324	90087191
ZNF711_chrX_85238991_85278357	1/0	t0001	2136	161	24	22	93	4	17	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/1	t0002	2136	76	33	8	26	1	7	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0003	2142	9	8	1	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0004	2124	7	1	2	1	0	3	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0005	2124	6	3	1	2	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0006	2148	2	0	0	2	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0007	2136	2	0	0	0	2	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0008	2136	2	2	0	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0009	2136	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0010	2136	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0011	2136	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0012	2136	1	0	1	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0013	2136	1	1	0	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0014	2132	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0015	2139	1	0	0	0	0	1	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0016	2145	1	1	0	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0017	2136	1	0	1	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0018	2142	1	1	0	0	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	t0019	2136	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF713_chr7_55882456_55947225	0/0	t0001	3017	71	21	14	30	1	5	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/1	t0002	3034	46	3	3	37	0	2	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0003	3022	28	0	2	22	3	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	1/0	t0004	3027	26	0	9	5	5	6	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0005	3020	22	6	5	0	5	6	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0006	3018	15	3	0	8	1	3	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0007	3025	14	9	2	2	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0008	3026	13	12	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0009	3009	12	1	2	9	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0010	3017	9	0	0	9	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0011	3018	8	1	2	4	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0012	3027	8	0	8	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0013	3037	7	2	1	3	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0014	3035	7	0	0	6	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0015	3028	5	0	0	5	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0016	3023	5	1	1	3	0	0	copy fasta	ZNF713	chr7	55882456	55947225