Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF713_chr7_55882456_55947225	0/0	t0017	3020	5	5	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0018	3019	5	2	0	1	0	2	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0019	3009	5	0	0	4	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0020	3017	4	0	0	4	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0021	3015	4	0	0	4	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0022	3038	3	0	1	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0023	3024	3	2	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0024	3022	3	3	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0025	3015	3	0	1	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0026	3028	3	0	0	3	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0027	3028	3	0	0	1	0	2	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0028	3026	2	1	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0029	3034	2	0	0	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0030	3033	2	2	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0031	3028	2	0	0	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0032	3025	2	0	0	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0033	3028	2	2	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0034	3024	2	0	0	2	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0035	3014	2	1	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0036	3017	2	0	0	0	1	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0037	3018	2	0	1	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0038	3021	2	0	2	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0039	3005	2	2	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0040	3030	2	1	0	0	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0041	3026	2	0	1	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0042	3028	2	0	0	0	0	2	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0043	3020	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0044	3039	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0045	3028	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0046	3082	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0047	3061	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0048	3052	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0049	3050	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0050	3046	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0051	3047	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0052	3044	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0053	3040	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0054	3040	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0055	3036	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0056	3033	1	0	0	0	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0057	3029	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0058	3031	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0059	3030	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0060	3026	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0061	3026	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0062	3028	1	0	0	0	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0063	3026	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0064	3028	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0065	3028	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0066	3022	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225