Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF713_chr7_55882456_55947225	0/0	t0067	3025	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0068	3020	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0069	3022	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0070	3016	1	0	0	0	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0071	3016	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0072	3017	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0073	3017	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0074	3017	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0075	3018	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0076	3010	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0077	3010	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0078	3011	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0079	3008	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0080	3007	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0081	3005	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0082	3033	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0083	3027	1	0	0	0	0	1	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0084	3028	1	0	1	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	t0085	3016	1	1	0	0	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF714_chr19_21077203_21130094	0/0	t0001	7089	83	5	22	36	9	11	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0002	7088	41	9	6	13	3	10	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	1/0	t0003	7085	36	8	3	19	2	3	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0004	7085	16	16	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0005	7086	15	13	2	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0006	7064	12	11	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0007	7078	10	1	6	0	2	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0008	7084	6	0	1	5	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0009	7089	6	0	3	3	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0010	7086	5	0	0	5	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0011	7077	3	3	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0012	7053	3	3	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0013	7090	3	3	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/1	t0014	7090	3	0	1	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0015	7086	3	1	2	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0016	7053	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0017	7086	2	1	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0018	7086	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0019	7089	2	0	0	0	0	2	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0020	7088	2	0	1	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0021	7090	2	0	0	2	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0022	7088	2	0	1	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0023	7089	2	0	0	1	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0024	7079	1	0	0	0	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0025	7088	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0026	7066	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0027	7061	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0028	7053	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0029	7084	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0030	7085	1	0	0	0	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0031	7088	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094