Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF714_chr19_21077203_21130094	0/0	t0032	7086	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0033	7085	1	0	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0034	7084	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0035	7083	1	0	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0036	7089	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0037	7089	1	0	0	0	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0038	7089	1	0	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0039	7088	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0040	7089	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0041	7090	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0042	7091	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0043	7088	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0044	7089	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0045	7089	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0046	7089	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0047	7087	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0048	7089	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0049	7087	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0050	7088	1	0	0	0	0	1	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0051	7088	1	0	1	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	t0052	7088	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF716_chr7_57445177_57478559	0/0	t0001	3720	97	23	21	35	4	14	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0002	3721	68	12	14	26	1	15	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0003	3721	41	1	0	40	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0004	3720	41	4	5	29	1	2	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	1/0	t0005	3723	37	2	13	14	2	5	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/1	t0006	3720	32	3	2	22	1	3	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0007	3721	22	0	5	17	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0008	3724	5	5	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0009	3722	5	5	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0010	3722	4	4	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0011	3721	4	0	0	4	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0012	3722	4	4	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0013	3721	4	3	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0014	3720	4	3	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0015	3724	3	1	0	2	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0016	3720	3	2	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0017	3719	3	1	2	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0018	3722	2	2	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0019	3721	2	0	0	0	0	2	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0020	3722	2	2	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0021	3720	2	0	0	0	0	2	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0022	3720	2	0	0	2	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0023	3720	2	0	2	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0024	3722	2	2	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0025	3720	2	2	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0026	3721	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0027	3721	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0028	3724	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0029	3723	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559