Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF716_chr7_57445177_57478559	0/0	t0030	3724	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0031	3723	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0032	3721	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0033	3723	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0034	3721	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0035	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0036	3723	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0037	3723	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0038	3723	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0039	3722	1	0	0	0	1	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0040	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0041	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0042	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0043	3720	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0044	3719	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0045	3721	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0046	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0047	3720	1	0	0	0	0	1	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0048	3719	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0049	3722	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0050	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0051	3721	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0052	3720	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0053	3720	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	t0054	3721	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF717_chr3_75730868_75790549	0/1	t0001	1176	154	38	31	58	7	19	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0002	1176	65	4	15	37	6	3	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0003	1179	51	13	10	21	1	6	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0004	1176	35	19	7	3	0	6	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0005	1176	27	3	0	23	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0006	1176	17	16	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0007	1176	4	0	0	4	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	1/0	t0008	1179	2	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0009	1158	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0010	1176	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0011	1176	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0012	1176	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	t0013	1179	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF718_chr4_119501_169162	0/1	t0001	2211	146	29	26	68	5	17	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0002	2211	50	2	9	28	2	9	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	1/0	t0003	2211	36	15	7	2	2	9	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0004	2211	18	0	13	0	3	2	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0005	2211	11	8	1	0	0	2	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0006	2211	11	0	1	10	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0007	2212	9	0	1	8	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0008	2211	7	0	3	0	0	4	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0009	2211	7	6	1	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0010	2211	6	5	1	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0011	2209	5	5	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0012	2211	3	3	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162