Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF721_chr4_434988_504156	0/0	t0006	1899	11	10	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0007	1899	6	0	3	0	1	2	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0008	1902	4	0	3	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0009	1902	4	0	0	4	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0010	1899	3	0	0	3	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0011	1899	3	2	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0012	1899	3	3	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0013	1899	2	1	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0014	1902	2	1	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0015	1902	2	0	1	0	1	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0016	1902	2	2	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0017	1899	2	2	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0018	1902	1	0	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0019	1902	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0020	1902	1	0	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0021	1899	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0022	1899	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0023	1899	1	0	0	0	1	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0024	1902	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0025	1902	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0026	1902	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0027	1899	1	0	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF722_chr7_63993849_64023081	0/1	t0001	2275	202	58	39	72	12	20	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	1/0	t0002	2275	117	22	13	68	3	10	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0003	2274	31	1	5	25	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0004	2274	22	0	3	18	0	1	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0005	2275	8	8	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0006	2275	7	0	0	7	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0007	2275	7	0	7	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0008	2275	6	0	1	0	0	5	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0009	2274	4	0	0	4	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0010	2276	3	3	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0011	2274	3	3	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0012	2275	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0013	2275	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0014	2275	1	0	1	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0015	2275	1	0	1	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0016	2275	1	0	0	0	0	1	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0017	2275	1	1	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0018	2275	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0019	2275	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0020	2275	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0021	2275	1	0	0	0	1	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0022	2274	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	t0023	2275	1	0	0	0	0	1	copy fasta	ZNF722	chr7	63993849	64023081
ZNF723_chr19_22827291_22863667	1/1	t0001	324	261	54	47	121	10	27	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	t0002	324	66	31	9	18	4	4	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	t0003	324	23	2	1	20	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	t0004	324	5	0	0	4	0	1	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	t0005	324	4	3	1	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667