Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF723_chr19_22827291_22863667	0/0	t0006	324	3	0	0	3	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	t0007	324	2	0	2	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF724_chr19_23216599_23255394	0/1	t0001	939	144	26	28	69	9	11	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	1/0	t0002	939	131	43	23	48	4	12	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	t0003	934	42	14	7	13	1	7	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	t0004	934	4	4	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	t0005	939	3	3	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	t0006	934	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	t0007	939	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF726_chr19_23909886_23939484	1/1	t0001	627	385	89	63	178	15	38	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0002	627	13	1	8	0	1	3	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0003	627	6	5	1	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0004	627	4	0	0	4	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0005	627	2	0	2	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0006	627	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0007	627	1	1	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0008	627	1	0	0	0	0	1	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0009	627	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0010	627	1	0	0	0	0	1	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	t0011	627	1	0	0	0	0	1	copy fasta	ZNF726	chr19	23909886	23939484
ZNF727_chr7_64040434_64090339	0/1	t0001	6982	100	11	28	47	2	11	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	1/0	t0002	6979	81	9	12	48	4	7	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0003	6982	35	16	2	12	2	3	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0004	6989	23	0	3	19	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0005	6982	23	15	3	0	2	3	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0006	6979	18	11	4	0	2	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0007	6979	17	2	0	15	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0008	6989	16	1	2	13	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0009	6989	12	0	2	10	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0010	6978	7	7	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0011	6980	7	6	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0012	6983	7	0	5	0	0	2	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0013	6979	5	0	0	5	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0014	6982	4	0	2	0	0	2	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0015	6979	4	0	0	4	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0016	6979	3	3	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0017	6989	3	3	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0018	6979	2	0	2	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0019	6981	2	1	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0020	6980	2	0	0	2	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0021	6983	2	0	0	2	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0022	6983	2	1	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0023	6978	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0024	6979	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0025	6979	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0026	6980	1	0	0	0	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0027	6979	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0028	6979	1	0	0	0	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0029	6982	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0030	6989	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339