Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF727_chr7_64040434_64090339	0/0	t0031	6989	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0032	6979	1	0	0	0	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0033	6979	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0034	6979	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0035	6980	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0036	6989	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0037	6989	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0038	6989	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0039	6989	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0040	6982	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0041	6981	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0042	6982	1	0	0	0	1	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0043	6982	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0044	6982	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0045	6982	1	0	0	0	1	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0046	6982	1	1	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0047	6982	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0048	6982	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0049	6982	1	0	0	0	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0050	6982	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0051	6988	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0052	6983	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0053	6979	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0054	6983	1	0	1	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	t0055	6989	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF728_chr19_22969883_23008176	0/1	t0001	732	187	16	37	97	8	28	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	1/0	t0002	732	82	30	13	32	2	4	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0003	732	36	32	4	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0004	732	6	6	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0005	732	2	0	0	0	0	2	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0006	732	2	0	2	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0007	732	2	0	0	2	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0008	732	2	2	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0009	732	1	1	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0010	732	1	1	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0011	732	1	0	0	1	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0012	732	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	t0013	732	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF729_chr19_22281441_22322176	1/1	t0001	86	387	89	64	184	12	36	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	t0002	86	5	5	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF730_chr19_23112025_23152221	1/1	t0001	815	265	74	52	109	4	24	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0002	815	10	3	3	0	2	2	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0003	815	6	5	1	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0004	815	4	4	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0005	815	3	3	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0006	815	2	0	0	0	0	2	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0007	815	1	1	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	t0008	815	1	0	0	1	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF732_chr4_265675_310474	1/1	t0001	589	230	58	47	83	8	32	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0002	589	48	0	16	21	4	7	copy fasta	ZNF732	chr4	265675	310474