Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF732_chr4_265675_310474	0/0	t0003	589	35	9	7	16	1	2	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0004	423	4	0	0	4	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0005	589	2	1	0	0	1	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0006	589	2	0	2	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0007	589	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0008	589	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0009	589	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0010	589	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	t0011	589	1	0	0	0	0	1	copy fasta	ZNF732	chr4	265675	310474
ZNF736_chr7_64308961_64361634	0/0	t0001	7694	56	2	13	30	1	10	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0002	7689	52	0	10	38	0	4	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0003	7683	37	0	5	28	2	2	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0004	7699	28	22	4	0	0	2	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0005	7682	23	1	4	15	0	3	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0006	7678	19	0	0	19	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0007	7685	15	12	3	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0008	7676	13	0	8	0	1	4	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0009	7699	12	0	8	0	2	2	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0010	7694	10	10	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0011	7684	9	2	4	0	3	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	1/0	t0012	7678	9	2	1	3	0	2	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0013	7694	8	0	0	8	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0014	7689	7	0	0	7	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0015	7694	6	0	0	6	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0016	7694	5	5	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0017	7682	4	4	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0018	7699	4	0	2	0	1	1	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0019	7685	4	4	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0020	7699	4	0	4	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0021	7704	3	1	0	0	0	2	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0022	7689	3	0	0	3	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0023	7694	3	0	0	2	0	1	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0024	7678	2	0	0	2	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0025	7690	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0026	7682	2	0	0	2	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0027	7683	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0028	7694	2	0	0	2	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0029	7689	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0030	7694	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0031	7699	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0032	7689	2	0	0	2	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0033	7699	2	2	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0034	7689	2	0	0	2	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0035	7694	1	0	1	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0036	7705	1	0	0	1	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0037	7678	1	0	0	0	0	1	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0038	7678	1	0	0	1	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0039	7685	1	0	1	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0040	7685	1	1	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	t0041	7693	1	0	0	1	0	0	copy fasta	ZNF736	chr7	64308961	64361634