Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF737_chr19_20532992_20570781	0/0	t0006	6749	10	0	0	10	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0007	6747	9	7	2	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0008	6749	9	8	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	1/0	t0009	6742	9	0	3	3	1	1	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0010	6742	9	0	1	0	0	8	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0011	6740	6	6	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0012	6749	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0013	6742	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0014	6740	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0015	6749	3	0	0	2	0	1	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0016	6742	3	0	0	3	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0017	6749	2	0	0	2	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0018	6741	2	0	0	2	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0019	6742	2	2	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0020	6748	2	1	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0021	6741	2	0	0	2	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0022	6747	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0023	6748	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0024	6749	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0025	6749	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0026	6749	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0027	6747	1	0	0	0	0	1	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0028	6749	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0029	6749	1	0	0	0	0	1	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0030	6749	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0031	6749	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0032	6749	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0033	6749	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0034	6749	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0035	6742	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0036	6742	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0037	6742	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0038	6742	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0039	6749	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0040	6742	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0041	6742	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0042	6742	1	0	0	0	0	1	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0043	6743	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	t0044	6742	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF738_chr19_21354000_21393582	0/0	t0001	5050	156	32	24	75	7	18	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	1/0	t0002	5050	58	1	4	46	2	4	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0003	5050	43	4	17	14	1	7	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/1	t0004	5050	27	2	10	5	4	5	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0005	5050	13	12	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0006	5050	9	7	0	1	0	1	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0007	5050	4	4	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0008	5050	4	0	4	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0009	5050	3	3	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0010	5050	3	0	0	3	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0011	5050	3	2	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582