Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF738_chr19_21354000_21393582	0/0	t0012	5038	3	3	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0013	5050	2	2	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0014	5050	2	2	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0015	5050	2	2	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0016	5038	2	1	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0017	5050	2	2	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0018	5050	2	2	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0019	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0020	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0021	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0022	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0023	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0024	5050	1	0	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0025	5038	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0026	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0027	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0028	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0029	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0030	5050	1	0	0	0	0	1	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0031	5050	1	1	0	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0032	5050	1	0	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0033	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	t0034	5050	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF740_chr12_53175722_53200142	1/1	t0001	7976	149	28	38	55	10	16	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0002	7976	42	2	14	17	1	8	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0003	7976	18	0	0	18	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0004	7976	16	0	0	16	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0005	7976	14	0	3	11	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0006	7976	13	5	0	1	0	7	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0007	7975	10	10	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0008	7976	8	7	1	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0009	7976	6	1	2	0	0	3	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0010	7976	5	0	0	5	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0011	7976	4	4	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0012	7976	4	0	0	4	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0013	7976	4	0	3	0	1	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0014	7976	3	3	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0015	7976	3	0	0	3	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0016	7977	3	0	1	2	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0017	7976	3	0	1	0	1	1	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0018	7976	3	0	2	0	0	1	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0019	7976	3	0	0	3	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0020	7976	2	2	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0021	7976	2	0	0	2	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0022	7976	2	0	0	2	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0023	7976	2	0	0	2	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0024	7976	2	0	0	2	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0025	7978	2	2	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0026	7976	2	0	0	0	0	2	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0027	7976	2	0	0	0	0	2	copy fasta	ZNF740	chr12	53175722	53200142