JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C3orf70_chr3_185071838_185158060	0/0	t0056	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0057	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0058	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0059	6407	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0060	6410	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0061	6411	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0062	6408	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0063	6408	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0064	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0065	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0066	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0067	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0068	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0069	6406	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0070	6406	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0071	6408	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0072	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0073	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0074	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0075	6406	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0076	6407	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0077	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0078	6407	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0079	6407	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0080	6408	1	0	0	0	1	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0081	6412	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0082	6412	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0083	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0084	6408	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0085	6407	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0086	6408	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0087	6411	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0088	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0089	6409	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0090	6409	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0091	6411	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0092	6410	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0093	6410	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0094	6411	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0095	6407	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0096	6405	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0097	6408	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0098	6407	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0099	6411	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0100	6430	1	0	0	0	1	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0101	6430	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0102	6431	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0103	6432	1	1	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0104	6433	1	0	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	t0105	6435	1	0	0	1	0	0	copy fasta	C3orf70	chr3	185071838	185158060