Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF740_chr12_53175722_53200142	0/0	t0078	7977	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0079	7976	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0080	7976	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0081	7976	1	1	0	0	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0082	7976	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	t0083	7976	1	0	0	0	1	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF746_chr7_149467794_149502809	0/0	t0001	1864	311	57	55	160	7	32	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0002	1864	57	11	10	28	3	5	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0003	1865	14	0	1	6	0	7	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0004	1864	13	12	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0005	1864	4	4	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0006	1864	4	0	0	0	4	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0007	1864	3	3	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0008	1864	2	2	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0009	1864	2	2	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0010	1864	2	2	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0011	1864	2	1	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0012	1884	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0013	1864	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0014	1864	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0015	1864	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0016	1864	1	0	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0017	1864	1	0	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0018	1864	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0019	1864	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0020	1864	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	t0021	1864	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF747_chr16_30525367_30539858	1/1	t0001	2312	315	67	79	114	18	35	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0002	2312	18	17	1	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0003	2314	5	5	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0004	2312	2	2	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0005	2312	2	0	0	2	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0006	2312	1	1	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0007	2312	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0008	2312	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0009	2312	1	1	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0010	2312	1	0	0	0	0	1	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0011	2312	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0012	2312	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	t0013	2312	1	1	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF749_chr19_57430325_57452101	0/1	t0001	1871	187	12	34	117	2	21	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	1/0	t0002	1871	69	7	12	35	3	11	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0003	1871	33	13	10	7	0	3	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0004	1871	33	1	7	18	4	3	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0005	1871	33	3	9	16	4	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0006	1871	16	2	5	5	3	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0007	1871	9	9	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0008	1871	8	4	3	0	0	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0009	1871	6	1	0	3	1	1	copy fasta	ZNF749	chr19	57430325	57452101
ZNF749_chr19_57430325_57452101	0/0	t0010	1871	5	5	0	0	0	0	copy fasta	ZNF749	chr19	57430325	57452101